Day 1 / 29 February Monday / 9:00 - 17:00 / Hörsaal Anthropologie
Basic concepts from probability and statistics and to learning R
Support files: Uebungen_R_Tag1.R.txt
Lecture slides: VL_Tag_1
Day 2 / 1 March Tuesday / 9:00 - 17:00 / Hörsaal Anthropologie
Data analysis methods in R relevant for bioinformatics and biomedicine.
Support files: Uebungen_R_Tag_2.R.txt / size_values / Excercises_R_day_2_Afternoon.R / Claims.txt / Fever.txt / Patients.txt
Lecture slides: VL_Tag_2
Day 3 / 2 March Wednesday / 9:00 - 17:00 / Hörsaal Anthropologie
Advanced concepts from probability and statistics in R
Support files: Exercises_day_3.R.txt
Day 4 / 3 March Thursday / 9:00 - 17:00 / Hörsaal Anthropologie
Application of R to GWAS studies
Support files: hyper_QTL.R.txt
R package installation: install_packages.html
Lecture slides: VL_Tag_4
Day 5 / 7 March Monday / 9:00 - 17:00 / Hörsaal Anthropologie
5.1 Analysis of ChIP-seq data using R
Lecture slides updated: ChIP-seq lecture The most relevant content for the exam is highlighted with blue background.
Support files: ChIP-seq Exercises
MCF7_FOXA1_binding.bed / MCF7_ER_binding.bed
5.2 Motif detection
Lecture slides updated: Motif Analysis The most relevant content for the exam is highlighted with blue background.
Support files: Motif Analysis Exercises
5.3 Sequence analysis and homology
Exercises: exercises1 / exercises2 / exercises3
Day 6 / 8 March Tuesday / 13:00 - 17:00 / IMB seminar room
8 seminars
Day 7 / 9 March Wednesday / 9:00 - 17:00 / Hörsaal Anthropologie
Summary of theory Dr. Muro: MuroMB2016
7.1 Multiple sequence alignments
7.2 Phylogenetic analyses
Day 8 / 10 March Thursday / 9:00 - 17:00 / Hörsaal Anthropologie
8.1 Protein 3D structure
Slides Chimera: chimera_2 / lesson_domains_2 / lesson_model3D_3_short
8.2 Protein secondary structure
Support files: MR1_fasta / littleMSA_fasta / ferredoxins2_fasta
Slides: lesson_pred2D_4_short
8.3 Non-globular proteins
Slides: lesson_bias_4_short
Day 9 / 11 March Friday / 9:00 - 17:00 / Hörsaal Anthropologie
9.1 Microarrays
Slides talk: GE_microarrays
Exercises: gene_expression.html
9.2 Networks
Support files: DEGs after 48-hr-treatment with Estrogen / S. cerevisiae sample network
Lecture slides: Protein interaction networks, STRING and Cytoscape
Day 10 / 14 March Monday / 9:00 - 16:30/ IMB seminar room
13 seminars
Files:
file1_fasta / file2_fasta / file3_fasta / file4_fasta
Links:
http://blast.ncbi.nlm.nih.gov/