Day 4
1. Structure modeling by homology
Links:
http://aquaria.ws
http://aquaria.ws/Q9HD67/
http://genetics.bwh.harvard.edu/pph2
2. Secondary structure
Files for practical part: MR1_fasta / glul_fasta / glul_aln
Links:
http://www.jalview.org
http://www.ncbi.nlm.nih.gov/gene
http://www.compbio.dundee.ac.uk/jpred4
Day 5
3. Protein feature prediction
Files for practical part: littleMSA_fasta / ferredoxins2_fasta
Links:
http://www.uniprot.org/uniprot/Q28WW9
http://www.uniprot.org/uniprot/Q28WW9.fasta
http://www.cbs.dtu.dk/services/TMHMM
4. Composition bias and repeats
Files for practical part: MR1_fasta / littleMSA_fasta
Links:
http://myhits.isb-sib.ch/cgi-bin/dotlet
http://matthuska.github.io/biasviz/
5. polyQ