Data mining
- Association of genes, proteins and chemicals with biological function [2002-2023]
- Information extraction of biological features from text [1997-2011, 2020]
- Evaluation of drug effects [2017-2019]
- Analysis of MEDLINE [2001-2015]
Protein analysis
- Protein interaction networks [2011-2023]
- Protein similarity
- Protein motif and composition analysis [2017-2023]
- Identification of protein tandem repeats [1995-2023]
- Identification of protein homorepeats [2017-2022]
- Protein classification [1997-1998, 2007, 2015-2022]
- Representation of protein properties [2000-2020]
- Protein domain analysis [2000-2019]
- RNAi screens [2014]
- Prediction of subcellular location [1998, 2008-2013]
- Prediction of secondary structure from CD spectra [1993-1994, 2008-2011]
Biomedical image analysis
show [2023]
Pluripotency
show [2007-2023]
High throughput data analysis
- RNAseq experimental analysis [2013-2023]
- Proteomics experimental analysis [2021-2022]
- Data quality and imputation [2020-2022]
- DNA microarray experimental analysis [2006-2022]
- Gene expression methods [2005-2019]
- Gene expression databases [2005-2014]
Genomic analysis
- Gene function prediction for complete genomes [1995-2010, 2023]
- Transcript regulation [2014-2022]
- Transcript prediction [2008-2021]
- Genome 3D structure [2017-2019]
- DNA repeats [2019]
- Transcription factor binding site analysis [2012-2016]
- Genomic intraspecies variation [2014]
- GeneQuiz development [1999-2000]
Biological modelization
- Self-organization of the visual nervous system [1994-2002]
- Catalytic networks of self-replicative species [1991-1993]
Reviews and highlights
show [1997-2001, 2009-2012, 2021-2023]