High throughput data analysis
- Data quality and interpretability [2020-2021]
- Proteomics experimental analysis [2021]
- RNAseq experimental analysis [2013-2020]
- Gene expression methods [2005-2019]
- DNA microarray experimental analysis [2006-2018]
- Gene expression databases [2005-2014]
Genomic analysis
- Transcript prediction [2008-2021]
- Transcript regulation [2014-2020]
- Genome 3D structure [2017-2019]
- DNA repeats [2019]
- Transcription factor binding site analysis [2012-2016]
- Genomic intraspecies variation [2014]
- Gene function prediction for complete genomes [1995-2010]
- GeneQuiz development [1999-2000]
Protein analysis
- Protein similarity
- Protein motif and composition analysis [2017-2021]
- Identification of protein repeats [1995-2021]
- Protein classification [1997-1998, 2007, 2015-2020]
- Representation of protein properties [2000-2020]
- Protein domain analysis [2000-2019]
- Protein interaction networks [2011-2020]
- RNAi screens [2014]
- Prediction of subcellular location [1998, 2008-2013]
- Prediction of secondary structure from CD spectra [1993-1994, 2008-2011]
Data mining
- Information extraction of biological features from text [1997-2011, 2020]
- Evaluation of drug effects [2017-2019]
- Association of genes, proteins and chemicals with biological function [2002-2016]
- Analysis of MEDLINE [2001-2015]
Pluripotency
[2007-2018]Biological modelization
- Self-organization of the visual nervous system [1994-2002]
- Catalytic networks of self-replicative species [1991-1993]