Support materials for EMBO PPI course 2016 in Budapest

Day 4

1. Structure modeling by homology

Links:
http://aquaria.ws
http://aquaria.ws/Q9HD67/
http://genetics.bwh.harvard.edu/pph2

2. Secondary structure

Files for practical part: MR1_fasta / glul_fasta / glul_aln

Links:
http://www.jalview.org
http://www.ncbi.nlm.nih.gov/gene
http://www.compbio.dundee.ac.uk/jpred4

 

Day 5

3. Protein feature prediction

Files for practical part: littleMSA_fasta / ferredoxins2_fasta

Links:
http://www.uniprot.org/uniprot/Q28WW9
http://www.uniprot.org/uniprot/Q28WW9.fasta
http://www.cbs.dtu.dk/services/TMHMM

4. Composition bias and repeats

Files for practical part: MR1_fasta / littleMSA_fasta

Links:
http://myhits.isb-sib.ch/cgi-bin/dotlet
http://matthuska.github.io/biasviz/

5. polyQ

Links:
http://cbdm-01.zdv.uni-mainz.de/~munoz/fh2