Support materials undergrad module 4-2 / September 2017

Day 3 / Protein structure / 6 September Wednesday / 9:00 - 17:00 / Hörsaal Anthropologie

09:00 - 10:00 Introduction to protein structure (lecture)

10:00 - 13:00 Visualization of structures with Chimera, Protein Domains (Practical work)

13:00 - 14:00 Lunch break

14:00 - 16:00 Protein structure determination (lecture with some practical exercise)

16:00 - 17:00 Homology Modelling

PDB model of 3CLpro from human SARS virus: 1p9t

Multiple sequence alignment of 3CLpro proteins: PF05409_7seqs

 

Links:

PDB: http://www.rcsb.org/pdb/

UniProt: http://www.uniprot.org

PFAM: http://pfam.xfam.org/

 

Software (ZDV-Apps):

Jalview, Chimera, Clustalw, Bioedit

ZDV-Apps - How to use